The definition with the Constraint object class. The important meaning ofThe definition in the Constraint

The definition with the Constraint object class. The important meaning of
The definition in the Constraint object class. The important which means of a constraint is this: if a dynamical analysis of a model (such as a simulation) reaches a state in which a constraint is no longer happy, the results on the evaluation are deemed invalid starting with that point in time. The exact behavior of a computer software tool, upon encountering a constraint violation, is left as much as the application; however, a software tool will have to somehow indicate towards the user when a model’s constraints are no longer happy. (Otherwise, a user might not realize that the evaluation has reached an invalid state and is potentially making nonsense outcomes.) If a application tool will not have support for constraints, it should indicate this for the user when encountering a model containing constraints. 4.two. The math elementConstraint has a single required subelement, math, containing a MathML Phillygenol web formula defining the condition in the constraint. This formula must return a boolean value of ” true” PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/23153055 when the model is in a valid state. The formula could be an arbitrary expression referencing the variables and also other entities in an SBML model. The evaluation of math and behavior of constraints are described in much more detail in Section four.2.four below. four.2.2 The message elementA Constraint object has an optional element known as message. This can contain a message in XHTML format that could possibly be displayed for the user when the condition from the constraint in math evaluates to a value of ” false”. Computer software tools are usually not expected to display the message, however it is recommended that they do so as a matter of very best practice.J Integr Bioinform. Author manuscript; offered in PMC 207 June 02.Hucka et al.PageThe XHTML content material inside a message element must follow the same restrictions as for the notes element on SBase described in Section 3.2.three. One example is, message must not contain an XML declaration or maybe a DOCTYPE declaration, plus the permitted content can only take one of the following general types: a total XHTML document starting with all the element html and ending with html; (two) the “body” portion of a document beginning together with the element body and ending with body; or (3) XHTML content which is permitted within a body … physique components. Appendix F describes 1 method to reading the message content material. 4.two.3 The sboTerm attributeThe Constraint object inherits from SBase the optionalsboTerm attribute of variety SBOTerm (see Sections 3..9 and 5). When a value is given to thisAuthor Manuscript Author Manuscript Author Manuscript Author Manuscriptattribute within a constraint definition, the value ought to be a valid SBO identifier referring to a mathematical expression (i.e terms derived from SBO:0000064, “mathematical expression”). The Constraint really should have an “is a” partnership with all the SBO term, along with the term must be by far the most precise (narrow) term that captures the role from the Constraint within the model. As discussed in Section five, SBO labels are optional information and facts on a model. Applications are totally free to ignore sboTerm values. A model will have to be interpretable without having the advantage of SBO labels. 4.two.four Semantics of constraintsIn the context of a simulation, a Constraint has effect constantly t 0. Every Constraint’s math element is initial evaluated right after any InitialAssignment definitions inside a model at t 0 and can conceivably trigger at that point. (In other words, a simulation could fail a constraint instantly.) Constraint definitions cannot and ought to not be applied to compute the dynamical behavior of a model as.